PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G044500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 242aa    MW: 24999.4 Da    PI: 8.0168
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G044500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.66.5e-41271271100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +
  Manes.05G044500.1.p  27 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVN 116
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+ael++l+++
  Manes.05G044500.1.p 117 LQAELSYLQAH 127
                          ******99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.04626128IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-4027125IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MNATANPSSS GGSGGGGGSS SSCASGPCGA CKFLRRKCVP GCIFAPYFDS EQGAAHFAAV  60
HKVFGASNVS KLLLHIPVHK RLDAVVTICY EAQARLRDPV YGCVAHIFAL QQQVVNLQAE  120
LSYLQAHLAT LELPSPPPPP PPPPTLLTPP PLSIADLPSA SSLPATYDLS SLFDPLAQPS  180
WAMQQRQMDP RQFSGSTGSS ALTSGGGDLQ SLARELLHRH GSPPQGSMPC TGSLSSPSSS  240
K*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445237.11e-117hypothetical protein CICLE_v10021992mg
RefseqXP_006491458.11e-117PREDICTED: LOB domain-containing protein 18
SwissprotO221317e-86LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A067HD701e-117A0A067HD70_CITSI; Uncharacterized protein
TrEMBLV4TY071e-117V4TY07_9R
STRINGGLYMA03G02620.11e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.13e-82LOB domain-containing protein 18