PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G015100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 412aa    MW: 46631.6 Da    PI: 6.9714
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G015100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.52e-31114218199
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+kv tpsdv+k++rlv+pk++ae++    + ++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L+ gD+v F++  
  Manes.05G015100.1.p 114 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSTSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDPGDIVSFQRGv 203
                          89***************************955567889*************************************************665 PP

                          SS.SEE..EEEEE-S CS
                   B3  86 gr.sefelvvkvfrk 99 
                          g+  + +l++ ++r+
  Manes.05G015100.1.p 204 GEsGKHRLYIDWRRR 218
                          777888899999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-41105225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-29111218IPR015300DNA-binding pseudobarrel domain
CDDcd100173.63E-27112213No hitNo description
PROSITE profilePS5086314.635114219IPR003340B3 DNA binding domain
PfamPF023625.9E-29114218IPR003340B3 DNA binding domain
SMARTSM010191.0E-22114219IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MNFVEQGRVY CDKEEQEEEE EGEEEEEMTP NKLPFSSPSS SSSSSTKYRN FLPQHQDLWL  60
GSSESQQEYK SRESSSLNFD KRLELMDLTL GNDNGTVNTG GTTHEQPIER EHMFDKVVTP  120
SDVGKLNRLV IPKQHAEKYF PLDSTSNEKG LLLNFEDRNG KPWRFRYSYW NSSQSYVMTK  180
GWSRFVKEKK LDPGDIVSFQ RGVGESGKHR LYIDWRRRPN APDPTSFAHL ELQNQLHFPQ  240
SLRWGRLYSL PQPLSSIARP YEQPQFQHLS YGIHHQPYHQ QYHYNQQGQY YLRPAGALPI  300
GAVHQQGGGQ APIVIDSVPV VHGRSVGKRL RLFGVNVECP TQDDRSSFSS SSGTIQAHGS  360
STTMGSFSPH LTASSLQPPQ SRLPSSGPMA TTQEAEFSKK GKTSLSFDLD L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-661092213116B3 domain-containing transcription factor NGA1
5os9_B7e-661092213116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G015100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611448.10.0B3 domain-containing transcription factor NGA1-like isoform X2
SwissprotO827993e-81NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A2C9VSH10.0A0A2C9VSH1_MANES; Uncharacterized protein
STRINGcassava4.1_008697m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.19e-77B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,LapÄ—nas K,KauneckaitÄ— K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]