PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G145200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 550aa    MW: 61593.5 Da    PI: 6.1759
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G145200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS265.32.1e-811645412374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          ++lL  cA a++ g+l+++q+lL  l+elas++gd+++Rla+y ++AL+++l++  s++++++ p + ++++ +    +l  f+evsP++
  Manes.04G145200.1.p 164 EHLLNPCAAAITIGNLSRVQHLLYVLHELASSTGDANHRLAFYGLRALNHHLSS--STTSASIGPISFASTEPKFFQRSLIKFYEVSPWF 251
                          699**************************************************9..77777787777776666666667667******** PP

                 GRAS  92 kfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLak 167
                           f + +aN+ Il+ +++e    + +Hi+D+++s+G+QWp+Ll+aL+ R+ ++pp +RiT+v +  ++               +   rL +
  Manes.04G145200.1.p 252 AFPNNIANSSILQILAQEldhkRNLHILDIGVSHGVQWPTLLEALSRRQgGPPPLVRITVVTATVENdqntetpfsVGPPGDNFSTRLLS 341
                          **************99999887899************************55666******9986665666677766666778999***** PP

                 GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..ns.esFl 254
                          fA+ +++++++n l  + l++l+ + ++++p+E+l+V+ +++lh+l    +++++er+e+L+++++l+Pk v+++e+++d+  ns ++F+
  Manes.04G145200.1.p 342 FAKCMNINLQINRLDNHPLQNLNGQVMNTDPEETLIVCAQFRLHHLN---HNTPDERTEFLRILRGLQPKGVILSENNTDCscNScGDFA 428
                          *************9999*****************************8...77777889*******************96664354259** PP

                 GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                          ++f++ ++y ++++ds+++ +    + r + Er+l++ e+ ++++++g++    +e +ekW er++++GF +  ++e+a +  ++llrk+
  Manes.04G145200.1.p 429 TGFSRRVDYLWKFLDSTSSAF----KGRESEERRLMEGEAAKALTNRGEM----NEGKEKWCERMRRVGFVSEVFGEDAIDGGRALLRKY 510
                          *****************8886....78888888889999******99999....9*********************************** PP

                 GRAS 345 k.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          + ++++r+ee +g++ l Wk+ p+ ++S W+
  Manes.04G145200.1.p 511 DsNWEMRIEETDGCIGLRWKGLPVSFCSLWK 541
                          *9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.376137520IPR005202Transcription factor GRAS
PfamPF035147.2E-79164541IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MTLEEPEPNH ISDHILDWLE DSASFLPSFL DDPYSSSDIY SYQWWNQTEE ICQDPINNNA  60
SLSSSTSTAV NADSTSLIEA SNPTTSNHQQ LSNLSRKREA ADDPLPQTSH HHQRKKQNHR  120
ISNEDQDGEQ AVEVVAGKKS NGNKKINSKN AGNNGNNREG RWAEHLLNPC AAAITIGNLS  180
RVQHLLYVLH ELASSTGDAN HRLAFYGLRA LNHHLSSSTT SASIGPISFA STEPKFFQRS  240
LIKFYEVSPW FAFPNNIANS SILQILAQEL DHKRNLHILD IGVSHGVQWP TLLEALSRRQ  300
GGPPPLVRIT VVTATVENDQ NTETPFSVGP PGDNFSTRLL SFAKCMNINL QINRLDNHPL  360
QNLNGQVMNT DPEETLIVCA QFRLHHLNHN TPDERTEFLR ILRGLQPKGV ILSENNTDCS  420
CNSCGDFATG FSRRVDYLWK FLDSTSSAFK GRESEERRLM EGEAAKALTN RGEMNEGKEK  480
WCERMRRVGF VSEVFGEDAI DGGRALLRKY DSNWEMRIEE TDGCIGLRWK GLPVSFCSLW  540
KLDLKGNDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-251645416375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012069237.10.0PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A067L8A60.0A0A067L8A6_JATCU; GRAS11 protein
STRINGVIT_09s0002g01190.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-177GRAS family protein