PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G092400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 531aa    MW: 57630.7 Da    PI: 5.1587
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G092400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11346388754
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+r+N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Manes.04G092400.1.p 346 MAERRRRKRLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 388
                          79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.853339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-16342409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9345388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-14345394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.38E-6346392No hitNo description
Gene3DG3DSA:4.10.280.106.1E-15346401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.53E-7459519No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MVLGANGVVW MDGVGGGAAA AVEEEDEDAV SSWTRHHNND NEIEPKDEDL GINASLSSFK  60
SMLETDWYDI NPSSHHDLHN LQNHHDIRDL AFCPNPAPEN LLLQPMDSSS SCSPSQAFNL  120
DPAQSHQPFL PPKSCFSSLL NVTNPFDNSF DLGCETSFLG QYQPNQAPNL MGFSGPEFQA  180
PHLLPAPDNA AAVGGSGFGN VGLEGFDGST GNALFLSRAK VLRPLEVLPP VGSPPTLFQK  240
RAMLRQSGDK LGNLEVPGLR YGGEMGGNWG EMERKRKKCE EGEIDEGSFD VSGLNYDSDE  300
HNGDGKMEES VKNNGGSNSN ANSTVTGGGG ADQKGKKKGM PAKNLMAERR RRKRLNDRLY  360
MLRSVVPKIS KMDRASILGD AIDYLKELLQ RINDLHNELE STPPGPLLPQ STSIHPLTPT  420
PPTLPNRVKE ELCPSSLSSP KNQPAKVEVR VREGRAVNIH MFCARRPGLL LSTMRALDNL  480
GLDIQQAVIS CFNGFALDVF RAEQCREGQD VLPEQIKAVL LDSAGFHGMM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273277RKRKK
2335353KKKGMPAKNLMAERRRRKR
3347354ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306848.10.0transcription factor ICE1
SwissprotQ9LSE21e-164ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A067L0720.0A0A067L072_JATCU; Inducer of CBF expression 2
STRINGVIT_14s0068g01200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-143bHLH family protein