PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G192500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 481aa    MW: 50714.6 Da    PI: 8.3564
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G192500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-124974227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         +++ C +++rtG+C yG+rC+F+H++
  Manes.03G192500.1.p 49 DEADCIYYLRTGFCGYGARCRFNHPR 74
                         6799********************96 PP

2zf-CCCH39.11.3e-1296120327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C++++rtGtCk+G++Ck++H++
  Manes.03G192500.1.p  96 QPVCQYYMRTGTCKFGASCKYHHPR 120
                          689********************96 PP

3zf-CCCH35.41.9e-11141166227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C ++ +tG+Ck+G++CkF+H++
  Manes.03G192500.1.p 141 GERECTYYVKTGQCKFGATCKFHHPQ 166
                          789*********************97 PP

4zf-CCCH38.71.7e-12306332127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+++++tG Ck+G++C+++H+p
  Manes.03G192500.1.p 306 PGQPECQYYMKTGDCKFGSSCRYHHPP 332
                          5789*********************97 PP

5zf-CCCH28.33e-09355378427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          + C ++ + G+Ck+G+ CkF H++
  Manes.03G192500.1.p 355 PTCTHYTQRGQCKFGPACKFDHPM 378
                          78********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.7E-54774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0514775IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-104974IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-65175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-55374IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-793120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.90193121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-695120IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-1096120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-598120IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.633139167IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-9141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6142167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4145165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.389305333IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6305332IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-10307332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6309333IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5311332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408351379IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6351378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5354381IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-7355378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4357376IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MDRYGRTQEG SQSDPSPEWT APRPETGIEE GVWQLGLGEG ESGYPERPDE ADCIYYLRTG  60
FCGYGARCRF NHPRDRGAVI GAARAGAGQF PERVGQPVCQ YYMRTGTCKF GASCKYHHPR  120
QGGGSVSPVS LNYYGYPLRQ GERECTYYVK TGQCKFGATC KFHHPQPANL QIPAQSLAPQ  180
VAPVPAPVAA PGLYPTMQSP SVPSTQQYGI VVARPPLLPS SYVQGPYGPM LFSPGVVSYP  240
SWSSYPAPVS PVASPSTQAG VGSGSVYGIT QLSPSAPAYT GIYQPMSTSI GPSSSSQKEH  300
SFPERPGQPE CQYYMKTGDC KFGSSCRYHH PPELIAPKTT VLLSPIGLPM RPGAPTCTHY  360
TQRGQCKFGP ACKFDHPMGT LSYSPSASSL ADMPVAPYPV GSAIGTLAPS SSSSELRPEL  420
ISGSSKDSSS TRMSSSSSTS SGLVGSTFSK SGPVPHSGVQ QSSHSSGPST GSITEAHTSS  480
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013662.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ84W911e-171C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A067L7C50.0A0A067L7C5_JATCU; Uncharacterized protein
STRINGVIT_05s0020g01650.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-137C3H family protein