PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G183200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YC
Protein Properties Length: 255aa    MW: 28219.8 Da    PI: 5.8765
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G183200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.71.1e-55751781101
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trt+
  Manes.03G183200.1.p  75 QLQTFWTNQyqeIEQVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTE 164
                          89******99999***************************************************************************** PP

                NF-YC  88 ifdflvdivprdel 101
                          ifdflvdivpr++l
  Manes.03G183200.1.p 165 IFDFLVDIVPREDL 178
                          ***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.34E-3362169IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.3E-3789161IPR009072Histone-fold
PfamPF008081.6E-2197160IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDQRGHGQAS APGEVRSTAP VPYGISYQPN QMMGAAATGS LPSAAQPAGV AASQAQHQLA  60
YQHIHQQQQE QLQQQLQTFW TNQYQEIEQV NDFKNHSLPL ARIKKIMKAD EDVRMISAEA  120
PVIFARACEM FILELTLRSW NHTEENKRRT LQKNDIAAAI TRTEIFDFLV DIVPREDLKD  180
EVLASVPRGS LPIGGPAEAI PYYYMSPQFA PQVAPPGMGV GQPVVDQNLY GQHSRPYAAQ  240
PIWPQQQPQP PADS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C8e-42601753119HapE
4g92_C8e-42601753119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147153RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006378139.11e-138hypothetical protein POPTR_0010s03730g
SwissprotQ8L4B21e-80NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLU5G1091e-138U5G109_POPTR; Uncharacterized protein
STRINGPOPTR_0010s03730.11e-137(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.45e-77nuclear factor Y, subunit C9