PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G173200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 359aa    MW: 41376.7 Da    PI: 4.8254
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G173200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.12.2e-36411322102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+i+ed ++++++sws+ +nsfvv+d+++f+ ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k
  Manes.03G173200.1.p  41 FLTKTYDIVEDTATNHIVSWSRGNNSFVVWDPQTFTMSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQK 121
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k+
  Manes.03G173200.1.p 122 HLLKNIRRRKN 132
                          *********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.31E-3537130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-6137130IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.5E-3937130IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.7E-194164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.2E-3241130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-1992104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MNRLQRVKEE YAGASSSYSG ITSAAIPQPM EGLQDAGPPP FLTKTYDIVE DTATNHIVSW  60
SRGNNSFVVW DPQTFTMSLL PRYFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGQ  120
KHLLKNIRRR KNLHPQVSQH CLDPCVEVGR FGLDGEVDRL RRDKEVLMME LVKLRQQQQN  180
TKCYLKLMEY RLKRTETKQQ QMMGFLAKAM RNPNFMQQLV QQRDMRKELE EAISKKRRLP  240
IDQGPSNVQV GEFSHGEVLE TFVKIEPQEL GDLSEFEVSE LDALAMTMQG VSGSQQNMEE  300
ECLERHEPED KDLDEGFWDD LLNEDTVEEM DILGGDVEDI DALVEQLGYL GSSPKQTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-26191305129Heat shock factor protein 1
5d5v_B8e-26191305129Heat shock factor protein 1
5d5v_D8e-26191305129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517070.10.0PREDICTED: heat stress transcription factor A-6b isoform X2
SwissprotQ9LUH81e-142HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLB9RTK10.0B9RTK1_RICCO; Heat shock factor protein HSF30, putative
STRINGPOPTR_0010s09210.11e-175(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-143heat shock transcription factor A6B