PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G167600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 223aa    MW: 24592.3 Da    PI: 8.2024
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G167600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.9e-056082123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C++ F++   L  H+++H
  Manes.03G167600.1.p 60 YTCSFCKREFRSAQALGGHMNVH 82
                         9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.4E-65786No hitNo description
PfamPF139121.4E-66083IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.246087IPR007087Zinc finger, C2H2
SMARTSM003550.00386082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MERNSLSNSL KDHSIGSRAS SSSNNNSQNN KNKLKYSWNY NNQSCGEDYL SGFSWPPRSY  60
TCSFCKREFR SAQALGGHMN VHRRDRARLR QSPARDGQCP ILNLNVNLNP NPSFSPPVTS  120
TFPSSAPPLS ALSSPSFASS SETKKWAIDD SPFLDPLSPK SSDLTKIGTG KALFDAEEFD  180
GFTREDGCKL SKKAEIIRLD LEIGLLSESK EDLDLELRLG YS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-145582229superman protein
2l1o_A3e-145582229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G167600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607255.11e-161transcriptional regulator SUPERMAN-like isoform X2
TrEMBLA0A251LBF81e-160A0A251LBF8_MANES; Uncharacterized protein
STRINGcassava4.1_030469m1e-160(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-26C2H2 family protein