PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G048400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 262aa    MW: 29911.5 Da    PI: 6.9147
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G048400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.86.6e-37111121101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleq 89 
                          aCaaCk++rr+Ca+dC+lap+fp++++++f n+hklFG++n++++lk+lp+ e +++a++s++y+A+ar++dPv G++++i++l+ q+e 
  Manes.03G048400.1.p  11 ACAACKYQRRRCAPDCALAPHFPSNRASDFLNAHKLFGVRNIVRTLKKLPTFEeKKHAITSMIYQANARVSDPVGGCHRIITQLKTQIEF 100
                          7************************************************765549*********************************** PP

               DUF260  90 lkaelallkeel 101
                           + +l+l+++++
  Manes.03G048400.1.p 101 YELQLNLVRQQI 112
                          ********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.92410112IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-3411109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MRPNTPGGNQ ACAACKYQRR RCAPDCALAP HFPSNRASDF LNAHKLFGVR NIVRTLKKLP  60
TFEEKKHAIT SMIYQANARV SDPVGGCHRI ITQLKTQIEF YELQLNLVRQ QIAFHQRLTS  120
HNLQDSTPLN VYDDVQLQQH EEPSIVHVDY QHPHNYNSFD DVVASHHLKD SPPLNIYDSA  180
QLHPIGYVEQ QQQQQQEEPA IVKIESEELS SSCLGENDSQ LSPSSKQHFA VDEIIFQMIH  240
SRDYSFEKNP QFKFSFLSCK A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-2531123111LOB family transfactor Ramosa2.1
5ly0_B6e-2531123111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G048400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605841.11e-165LOB domain-containing protein 7-like
SwissprotQ9LRW12e-34LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A2C9W4N30.0A0A2C9W4N3_MANES; Uncharacterized protein
STRINGcassava4.1_026092m1e-142(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2781523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-36LOB domain-containing protein 22
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]