PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G035500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 420aa    MW: 47329.8 Da    PI: 4.8274
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G035500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.95.1e-361001912102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Flkk+++++ed+e+++++sws+ng+sf+v+d +ef+k++LpkyFkh nf+SF+RQLn+YgF+k++ ++         weF+++ F+ g+k
  Manes.03G035500.1.p 100 FLKKTFQMVEDPETDSTVSWSKNGDSFIVWDAHEFSKTLLPKYFKHCNFSSFIRQLNTYGFRKIDPDR---------WEFANEGFRGGEK 180
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++ikr+++
  Manes.03G035500.1.p 181 HLLKNIKRRSR 191
                          ********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.2E-3996189IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-3596189IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.9E-5996189IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.9E-32100189IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-19100123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-19138150IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340139163IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-19151163IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MPVVRQSISL NSAAFGEATH GGLPSSSSSS INTPEIQKPA VNDTVNVITI KSEDEEEYTG  60
AIGFGDEFEG VNEDGSSSSS FSVDLPKSME GLHDTGPPPF LKKTFQMVED PETDSTVSWS  120
KNGDSFIVWD AHEFSKTLLP KYFKHCNFSS FIRQLNTYGF RKIDPDRWEF ANEGFRGGEK  180
HLLKNIKRRS RYNKQQQGKA IGDDSPKSDL EAELENLKND QDLLRIEILK LRQQRENSDN  240
QLSIVEQHIQ VAECKQLQMF IFLNKAAKNR AFIQNLIQKR KQQRELGGSA FKKRRSLSTQ  300
IPKSLPDAAD ASQSVNCRHQ AQEQLAAMQT ELTEVLREDT ETNTMSKLIE QPMSDELYSP  360
IDDQKASLIC GTNDRETVYH LMSEKLLDDN AGSENLVEQD LEVNETKLYL ELENLIGKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-25751894129Heat shock factor protein 1
5d5v_B3e-25751894129Heat shock factor protein 1
5d5v_D3e-25751894129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182188LKNIKRR
2278294KRKQQRELGGSAFKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076960.10.0PREDICTED: heat stress transcription factor A-2-like
SwissprotO809823e-78HSFA2_ARATH; Heat stress transcription factor A-2
TrEMBLA0A067KPW60.0A0A067KPW6_JATCU; Uncharacterized protein
STRINGPOPTR_0006s15050.11e-160(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-79heat shock transcription factor A2