PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G136700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 275aa    MW: 31518.9 Da    PI: 7.2521
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G136700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.4e-35261172102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+ +++++sw ++++sf+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF++++F+kg k
  Manes.02G136700.1.p  26 FLTKTYQLVDDPLTDHIVSWGDDQTSFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANEYFRKGAK 106
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k+
  Manes.02G136700.1.p 107 NLLSEIHRRKT 117
                          ********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.9E-3818109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.2E-5722115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3223115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAFTVERCDE EMVFCVESQK AVPAPFLTKT YQLVDDPLTD HIVSWGDDQT SFIVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFKKVV ADRWEFANEY FRKGAKNLLS EIHRRKTPLN  120
QQPPVILPHQ ILQQEETFGW IDPPIFPLSP KPTTDLLTAL SEDNQRLRRK NYMLLSELSH  180
MKSLYNDIIY FIQSHVKPPQ ALPHEQKGYS SSTFPKIVEL GPSCQDQLSP RDFGLGKSSV  240
SLSEEANGSV KLFGVALSGK KRLHTEVIDQ QALY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-222212017125Heat shock factor protein 1
5d5v_D8e-222211726131Heat shock factor protein 1
5d5v_B8e-222211726131Heat shock factor protein 1
5d5u_B8e-222211726131Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015583337.11e-144PREDICTED: heat stress transcription factor B-4
SwissprotQ7XHZ02e-85HFB4B_ORYSJ; Heat stress transcription factor B-4b
SwissprotQ9C6352e-85HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0N7DMK51e-137A0A0N7DMK5_9R
STRINGPOPTR_0001s28040.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-86heat shock transcription factor B4