PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G068400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 303aa    MW: 32634 Da    PI: 7.1439
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G068400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601011.1e-314107199
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++
  Manes.02G068400.1.p   4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallke 99 
                          ql+q+++e++l ++
  Manes.02G068400.1.p  94 QLCQAAVEAVLKGT 107
                          *******9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381557.8E-971297IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.1063109IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGTPIT PINSEAAANG  120
QGPPLKAYDI RHVSKDENSA ASNDPNRVKT RCRVRRVVKP KVSDNKPCAG VGFGSVVEPA  180
RDELTRSTSH ESSVSHQSEL AMVDGESKET ESMVSVETAE ASLMFRAEPE SAVKGNEGVH  240
DHASTEMAGV GLELTLGLEP VSRASHMVPV KKRKLEVEAY GYGSSDDESC KIELGLDYPA  300
CH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G068400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602536.10.0LOB domain-containing protein 41-like
SwissprotQ9M8861e-109LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2C9WBI90.0A0A2C9WBI9_MANES; Uncharacterized protein
STRINGcassava4.1_012667m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-102LOB domain-containing protein 41