PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G039900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 325aa    MW: 36293.7 Da    PI: 6.7779
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G039900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012426123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         +kC+ C+++F +   L  H++ H
  Manes.02G039900.1.p  4 HKCKLCTRTFANGRALGGHMKAH 26
                         79******************998 PP

2zf-C2H212.10.00061262284123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C k+F +   L  H r+H
  Manes.02G039900.1.p 262 FECPYCFKVFGSGQALGGHKRSH 284
                          89**************9999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.8E-6327IPR007087Zinc finger, C2H2
SMARTSM003550.056426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM00355110223243IPR015880Zinc finger, C2H2-like
PfamPF139120.0017224243IPR007087Zinc finger, C2H2
SMARTSM003550.15262284IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-11262285IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681262284IPR007087Zinc finger, C2H2
PROSITE patternPS000280264284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MERHKCKLCT RTFANGRALG GHMKAHLATL PLPPKTTITT QQQQLGERTE SASSSYSSPG  60
EEQEQEIKNR EVEEKALVYG LRENPKKSFR FADPEFSFAV DAGSVVQDRE SETESRNPTR  120
RRSKRTRKSG FAENQKQNFD VKKLKLKNLS SVESPTEPEP VSSVSDTSPE EDVAMCLMML  180
SRDVWMRNNE EEDQEQGKDG ERSIGMMLEE AEEIKVSKIR GKLRCEKCMK LFRSSQALGA  240
HKRICSLNGT ELRNNEGNQR IFECPYCFKV FGSGQALGGH KRSHLIGTST PSAVENSAKL  300
DNNLIDLNLP APAEDDDFSV VSDA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119144RRRSKRTRKSGFAENQKQNFDVKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G039900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605179.10.0zinc finger protein ZAT4-like
TrEMBLA0A2C9WDA00.0A0A2C9WDA0_MANES; Uncharacterized protein
STRINGcassava4.1_011850m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-32C2H2-like zinc finger protein