PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G030500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family TALE
Protein Properties Length: 303aa    MW: 34205.5 Da    PI: 6.7068
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G030500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.9e-082512842154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp+++++++L +++gL+ +q+ +WF N+R +
  Manes.02G030500.1.p 251 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 284
                          469*****************************87 PP

2ELK25.43.2e-09205226122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK +L++++++++ ++++E++
  Manes.02G030500.1.p 205 ELKIELKQGFKSRIEDVREEIL 226
                          9*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.2E-193680IPR005540KNOX1
PfamPF037901.6E-173879IPR005540KNOX1
SMARTSM012561.1E-2394149IPR005541KNOX2
PfamPF037913.9E-1797148IPR005541KNOX2
PROSITE profilePS512139.132205225IPR005539ELK domain
PROSITE profilePS5007111.677225288IPR001356Homeobox domain
SMARTSM003891.4E-10227292IPR001356Homeobox domain
SuperFamilySSF466894.11E-16227292IPR009057Homeodomain-like
CDDcd000861.54E-11228289No hitNo description
Gene3DG3DSA:1.10.10.606.1E-25232291IPR009057Homeodomain-like
PfamPF059201.0E-17245284IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MQEQNLGIMG SDSGSALGGL NSGREVSMSP SGDQTRQLKA EIATHPLYEQ LLAAHVSCLR  60
VATPIDQLPL IDAQLSQSHH ILRSYVSQHN QHGHTLSPHE RQELDNFLAQ YLIVLCSFKD  120
QLQQHVRVHA VEAVMACREI ENTLQALTGV TLGEGTGATM SDDEDDLQMD FSLDQPSADG  180
HDLMGFGPLL PTESERSLME RVRQELKIEL KQGFKSRIED VREEILRKRR AGKLPGDTTT  240
VLKNWWQQHS KWPYPTEDDK AKLVEETGLQ LKQINNWFIN QRKRNWHSNS QSATSLKSKR  300
KR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12228284864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281301RKRNWHSNSQSATSLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087042.10.0PREDICTED: homeobox protein HD1
SwissprotQ9FPQ81e-169KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A067JRS60.0A0A067JRS6_JATCU; Uncharacterized protein
STRINGGLYMA01G42410.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63483450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-171KNOTTED-like homeobox of Arabidopsis thaliana 7