PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G265300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 251aa    MW: 25832.2 Da    PI: 8.297
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G265300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.28.7e-41301301100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +
  Manes.01G265300.1.p  30 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVSHIFALQQQVVN 119
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+ael++l+ +
  Manes.01G265300.1.p 120 LQAELSYLQGH 130
                          ******99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.10229131IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-4030128IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSSTANPSSS GGSGGGGGGS SSSSSGGSGP CGACKFLRRK CVPGCIFAPY FDSEQGAAHF  60
AAVHKVFGAS NVSKLLLHIP VHKRLDAVVT ICYEAQARLR DPVYGCVSHI FALQQQVVNL  120
QAELSYLQGH LAALELPSPP PPPPPPPTLV TPPSRSIADL PSASSIMPAA TYDLSSLFDP  180
MTQPSWPMQQ RQMDIRQFGG SMAGGSSSAT SGGGDLQSLA RELLHRHGSP PQGSMSCTGS  240
LSSPSISKRD *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301295.21e-111hypothetical protein POPTR_0002s15000g
RefseqXP_012083561.11e-110PREDICTED: LOB domain-containing protein 18
SwissprotO221312e-83LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A067KAC71e-110A0A067KAC7_JATCU; Uncharacterized protein
TrEMBLB9GPH41e-111B9GPH4_POPTR; Uncharacterized protein
STRINGVIT_15s0048g00830.t011e-101(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.12e-79LOB domain-containing protein 18