PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G204200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 352aa    MW: 40148.9 Da    PI: 4.8941
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G204200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.41.2e-34431342102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k++e+++d+ +++++sws+ g+sfvv+d++ f+ ++Lp+ Fkh+nf+SFvRQLn+YgFkk++ ++         weF+++ F +g+k
  Manes.01G204200.1.p  43 FLNKTFEMVDDPITNHVVSWSSGGSSFVVWDPHFFSASLLPRCFKHNNFSSFVRQLNTYGFKKIDPDR---------WEFANEGFLRGQK 123
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++ikr+k+
  Manes.01G204200.1.p 124 HLLRNIKRRKT 134
                          *********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3739132IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.66E-3539132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5739132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-184366IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3043132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-188193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-1894106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MNPYYTVKEE YPGSSSPPSG DEQPITFLPQ PMEGLHDTGP PPFLNKTFEM VDDPITNHVV  60
SWSSGGSSFV VWDPHFFSAS LLPRCFKHNN FSSFVRQLNT YGFKKIDPDR WEFANEGFLR  120
GQKHLLRNIK RRKTPSQLLP QQQALGACVE VGRFGLDREI DRLKRDKQVL MMELVKLRHQ  180
QQNTRAHIQA MEQRLQCTEV KQQQMMQFLA RAVQNPAFLQ QLAQQKEERK ELEAMTKKRR  240
RPIDQGINTA ESSYGSGSRN PIKAEPVELG DYGFEVSELE ALALEMQGYG RARREEEEAE  300
AEEDIEPPES GDRELDEGFW DELLSESHGG GEDEDVDVLA ERFGFLGSSP K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-234113418122Heat shock factor protein 1
5d5u_B7e-234113427131Heat shock factor protein 1
5d5v_B7e-234113427131Heat shock factor protein 1
5d5v_D7e-234113427131Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520943.10.0PREDICTED: heat stress transcription factor A-7a
RefseqXP_015575825.10.0PREDICTED: heat stress transcription factor A-7a
RefseqXP_015575826.10.0PREDICTED: heat stress transcription factor A-7a
SwissprotQ9LUH81e-124HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLB9S4N60.0B9S4N6_RICCO; DNA binding protein, putative
STRINGPOPTR_0005s23640.11e-179(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-110heat shock transcription factor A6B