PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G160800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 703aa    MW: 76090.6 Da    PI: 5.9135
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G160800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06277297526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C+ Gd C +aHg
  Manes.01G160800.1.p 277 PCPEFRK-GSCRQGDACEYAHG 297
                          8******.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.26E-1570159IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.1E-1673148IPR020683Ankyrin repeat-containing domain
SMARTSM002480.02173103IPR002110Ankyrin repeat
PfamPF127962.1E-973142IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.40673143IPR020683Ankyrin repeat-containing domain
CDDcd002041.76E-1375148No hitNo description
SMARTSM002484.6E-4108140IPR002110Ankyrin repeat
PROSITE profilePS5008812.315108143IPR002110Ankyrin repeat
SMARTSM003561.0E-4272298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662277299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4305335IPR000571Zinc finger, CCCH-type
SMARTSM0035620307330IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.221307331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MCSGSKKKPT HTGVFMGNEF QKDGYCSDLS VLLELSASND LIGFKREIQG GREVDEPGLW  60
YGGRIGSKKM GFEERTPLMI AALFGSKDVL SYILEMGHVD VNRCCGSDGA TALHCAVAGG  120
SASSVEVVKL LLAASADPNA VDANGNCASD LLVPVACFSF NLRRQALELV LKGGCTSDES  180
CVLADQNPDE IDVQQQQEVS TPRLFKDGTD KKEYPVDLTL PDINYGIYGT DEFRMYTFKV  240
KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGSCRQGD ACEYAHGIFE  300
CWLHPAQYRT RLCKDETNCS RRVCFFAHKP EELRPLYAST GSAVPSPRSL SANGSALDMG  360
SISPLALGSP SVMIPPTSTP PVTPTGSLSP LGSWPSQSNI VPLNLQLPGS RLKSALSARD  420
MDMDAELFAL DSHHCRQQLM DEISGLPSPS SWNNGLSTAS AFAIFGDRTT ELTRLGGVKP  480
TNLEGIFGSL DPTILPQLQG LPGDATASQL QSPTEIRMRQ NINQLLRSSY PTNFPSSPVR  540
TPSFRIDSSG AAAAAVLNSR AAFANRSQSF IERSAVNRHT GFSSPTSSAT ILPSNLSDWG  600
SPDGKLEWGM QGQGLDKLRK SASFGIRSNG SSLAVAAVSE PATVDKLDVS WVQSLVKDTP  660
PQHSGHFSFE EQQQQCLINT GGSEMLPAWV EQLYIEQEQM VA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067418.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A067LPM40.0A0A067LPM4_JATCU; Uncharacterized protein
STRINGPOPTR_0001s25960.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein