PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G022500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 221aa    MW: 24351.2 Da    PI: 10.0025
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G022500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.3e-1752101255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y GVr+++ +grWvAeI+d s   ++ r +lg+f+taeeAa a++ a++ l+g
  Manes.01G022500.1.p  52 RYLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDTAEEAAMAYDSAARLLRG 101
                          689******.7*********42...36***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.5E-3552115IPR001471AP2/ERF domain
PfamPF008476.1E-1252101IPR001471AP2/ERF domain
PROSITE profilePS5103220.66652109IPR001471AP2/ERF domain
CDDcd000188.09E-3252109No hitNo description
SuperFamilySSF541713.2E-2052110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.0E-2952109IPR001471AP2/ERF domain
PRINTSPR003671.7E-85364IPR001471AP2/ERF domain
PRINTSPR003671.7E-87591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDKKQISKIP SSHQKNQTVS SESLEDRDKR STEDIINKQA RKSSNNGGLM RRYLGVRQRP  60
SGRWVAEIKD SSQKLRLWLG TFDTAEEAAM AYDSAARLLR GRNAKTNFDF HGNSIDTHQE  120
NCRFLGKNPR LYQLFQHAVM KNHARSSSPS AAAGEISNGT PWLDQNFEAM VEEDGSKKLC  180
GLSIGSSKVY SSVIVAPSFS ASSSSSSLLC QGEQNSCKKV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-14521081471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G022500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616327.11e-164ethylene-responsive transcription factor CRF3-like
TrEMBLA0A2C9WHG51e-163A0A2C9WHG5_MANES; Uncharacterized protein
STRINGcassava4.1_024529m1e-163(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-18related to AP2 11