PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000920127
Common NameMdTCP2A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 487aa    MW: 53178.8 Da    PI: 9.0704
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000920127genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.11.3e-33712322133
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssa.sec 73 
                     g+kdrhsk+ T++g+RdRRvRls+++ ++f+d qd+LG+d++sk++ WL+++a  ai el+++                       +++sa    
  MDP0000920127  71 SGGKDRHSKVWTSKGLRDRRVRLSVTTXIQFYDXQDRLGYDQPSKAVXWLIKAAADAIAELPSLnnssfpdtpkqlsdekrascergGFDSAeI-E 165
                    689*************************************************************888888888888777777776664444421.2 PP

            TCP  74 ...eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrik 133
                       + ++++s+ +n+s++ + +++a+s+ s++s+ s l+l++      r+kar+rarer ++++ ++
  MDP0000920127 166 fdqNYHQNQSQPGNQSQHLSLSKSACSSTSETSKGSGLSLSRseirVNRSKARERARERAAKDKEKE 232
                    3335566666666777777777777888888888888888875333555999999999877766554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.3E-4072231IPR005333Transcription factor, TCP
PROSITE profilePS5136928.20973131IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.115211231IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MXXEEIQASN KFPRIGNGSS RDHKPSPEDE DNQNPSCLDL KRAAAATATA DAGNRLRGWH  60
HSRIIRVSRA SGGKDRHSKV WTSKGLRDRR VRLSVTTXIQ FYDXQDRLGY DQPSKAVXWL  120
IKAAADAIAE LPSLNNSSFP DTPKQLSDEK RASCERGGFD SAEIEFDQNY HQNQSQPGNQ  180
SQHLSLSKSA CSSTSETSKG SGLSLSRSEI RVNRSKARER ARERAAKDKE KESIESSYQQ  240
SINNNISQQN ASFTELLTAG IGTTHNNNSP TASAQHHQQN HGGGGEPILF HKAAAPMDYF  300
SPGLLGLSSS ARTHHSSGFS EQIHLGMNSI PQTMSVVSPF NVSGEHHHGH HSSELQHFSF  360
VPDLIPVTTS SQPGSGVDYN LNFSISSSGG LAGFNRGTLQ SNSSSSPSLM PHHLQRFSPI  420
DGTSNVPFFI GAAAAAASPT MENHHHHHHQ QHQQHQQQFP GGFDRRLQQL YGDGTRHSDH  480
KGKAKN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.303410.0bud| fruit| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5310190.0AB531019.1 Malus x domestica MdTCP2A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008364193.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_008371621.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_008371622.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_008371623.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_008371624.10.0PREDICTED: transcription factor TCP2-like
TrEMBLD5MRQ00.0D5MRQ0_MALDO; MdTCP2A protein
STRINGVIT_10s0003g03910.t011e-154(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.23e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2