PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000916623
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 355aa    MW: 38809.8 Da    PI: 6.4586
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000916623genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.94.6e-35221382110
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........................ssssas 71 
                    +g+kdrhski+T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+++                          +     
  MDP0000916623  22 TGRKDRHSKIYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLVELppwhpittsnhaaeaddpfrssnpnpN----- 112
                    79**************************************************************888877654444444444433222220..... PP

            TCP  72 eceaesssssasnsssg..kaaksaakskksqksaasalnl 110
                                    +  + +  aa +++s++s++ + n+
  MDP0000916623 113 ---------------GPnpNDMVIAAAEQQSESSTSYNFNF 138
                    ...............11222222222222222222211111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-3122132IPR005333Transcription factor, TCP
PROSITE profilePS5136932.5992482IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGMEGCGGEI VEVQGGHIVR STGRKDRHSK IYTAKGPRDR RVRLSAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKSSID KLVELPPWHP ITTSNHAAEA DDPFRSSNPN PNGPNPNDMV  120
IAAAEQQSES STSYNFNFEL QRQRQSDNDS NFNIXPXLDS DNIADTMKSF FPTNTSSNAA  180
AASSVDDFRS YPTDPHLISA TTQDLGLSLH SFQDQGLNIH HNHTHTQQSS QALFAAAVGT  240
GFDSSSYQRM VAWSNENRGL DGGFVFNSHS HSYXQPXPHN HGGDGNHGST LQSSFTPSVS  300
TRAWQQQHSS IFGTRFGTSD GTSPVFCXQG EEAENGTISD RPSSTSSLNS TRQL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.144820.0bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5010640.0KM501064.1 Malus domestica TCP domain-containing protein 4 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008342868.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR53e-62TCP4_ARATH; Transcription factor TCP4
TrEMBLA0A0U2D5T40.0A0A0U2D5T4_MALDO; TCP domain-containing protein 4 (Fragment)
STRINGGLYMA13G36840.28e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-61TCP family protein