PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000871080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 828aa    MW: 90744.9 Da    PI: 6.8872
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000871080genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.84.1e-11356412155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  MDP0000871080 356 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 412
                    57*******************4444.2455535555.779999**************98 PP

2AP246.49.9e-15455506155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  MDP0000871080 455 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 506
                    57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-8356412IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-14356422IPR016177DNA-binding domain
CDDcd000183.52E-19356422No hitNo description
Gene3DG3DSA:3.30.730.101.0E-11357421IPR001471AP2/ERF domain
PROSITE profilePS5103217.319357420IPR001471AP2/ERF domain
SMARTSM003801.1E-22357426IPR001471AP2/ERF domain
PRINTSPR003676.2E-6358369IPR001471AP2/ERF domain
PfamPF008471.2E-9455506IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-17455515IPR016177DNA-binding domain
CDDcd000181.83E-24455514No hitNo description
Gene3DG3DSA:3.30.730.108.4E-18456514IPR001471AP2/ERF domain
PROSITE profilePS5103219.045456514IPR001471AP2/ERF domain
SMARTSM003802.4E-33456520IPR001471AP2/ERF domain
PRINTSPR003676.2E-6496516IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MGSMNWLGFS LSPQEVVPAD PMISEGADRR RHQHGQDLHD LSAQTTTPVS RFGFKYSDEI  60
SGTDASGTDA SGDCFDLTYS HDDSSATTTA PKHHSLNHLP PSFGMLHQAA FNSQGADWNM  120
NSSDSTNYKI TSDHLSMLMG RSNSCNTLNL ENHHNRHHQQ PKLENFLGRD SFIADHHDHI  180
QSSTNSAHAY NNNTASTNNT DYIFSRTASS LQLPLESAGP TDVINGDGAG VKINNNSSSS  240
NIGLSMIKTW LRNQPAPQQQ EMNKNDINGI GVSNTSTSTT ASTTSAQTLS LSMSTAGATT  300
AGDQTCSSDR DNNKQAIIRT AAVTTTQSGI DSQTSTSTAI EAVPRKSIDT FGQRTSIYRG  360
VTRHRWTGRY EAHLWDNSCR REGQTRKGRQ GGYDKEEKAA RAYDLAALKY WGTTTTTNFP  420
ISNYEKEVDE MKHMTRQEFV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK  480
DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV TNFDMTRYDV KSILESSTLP IGGAAKRLKD  540
VERAHHQHQH EMTLLADGHH RSTTDDQREK LMMMTRSTST SNCHDQYHQQ LINGDHHGMS  600
VNNVWPTLAL TQAAATAAHQ AVAPPFGTSY YSAVPYNSNG GQRVWCKQEQ DTNSQSFYQP  660
QDYHHQDLHH HQLLQLGSTH NFFQPVNLMG NSTTTDSMEH SSGSNSVIYN GTTAGDHGGY  720
IIPMGTVIAN GHENNSNAFG DGSSDHDQVK TALSYENVFG SSSTTTAADA YNHTKSLYYL  780
PVQAPQSSSV SSVGVAKGSS EYNNWVPIAV PTSTNNMAPF TVWNDTN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4296731e-163KC429673.1 Rosa canina BBM1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388822.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM1
TrEMBLM5W5M30.0M5W5M3_PRUPE; Uncharacterized protein
STRINGPOPTR_0010s18840.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-124AP2 family protein