PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000865032
Common NameAP2D34
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 326aa    MW: 36213.5 Da    PI: 5.9764
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000865032genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20134183255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  MDP0000865032 134 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAFKLRG 183
                    59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.11E-34133193No hitNo description
PROSITE profilePS5103223.341134191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-32134192IPR001471AP2/ERF domain
SMARTSM003807.4E-38134197IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-23134192IPR016177DNA-binding domain
PfamPF008471.4E-14135183IPR001471AP2/ERF domain
PRINTSPR003672.9E-11135146IPR001471AP2/ERF domain
PRINTSPR003672.9E-11157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MATAIDLYSS STMTPDLXDL LREDQLMKAL MPFMKSASST SPSTSYTYPP QNNQNFNLYP  60
DFCSAPMISQ AGVIGLNQLT PSXILEIQSQ MVLQQHQQKQ QIXAFASSAA YLKLLSTKAI  120
PMKKAGTPSK PTKLYRGVRQ RHWGKWVAEI RLPRNRTRLW LGTFDTAEEA ALAYDKAAFK  180
LRGDFACLNF PHLKHQGAXD SGAFGHYKXL HSSVDAKLQE ICQSLAANST KQGNTGEPCS  240
VPETKPMVSA PLETRMDDSF KTELKSEWEA FSSLSSSPSR SDRSDESSTP ESDITFLDFS  300
DSQWDEAENF GLEKYPSVEI DWSAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-22133191160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.303820.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324580.0GU732458.1 Malus x domestica AP2 domain class transcription factor (AP2D34) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028961509.10.0ethylene-responsive transcription factor ERF060-like
TrEMBLA0A1P8VHT70.0A0A1P8VHT7_9ROSA; DREB6.5
STRINGXP_009345480.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-54related to AP2 4
Publications ? help Back to Top
  1. Tacken E, et al.
    The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening.
    Plant Physiol., 2010. 153(1): p. 294-305
    [PMID:20237022]