PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000861160
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 175aa    MW: 19513.8 Da    PI: 6.9306
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000861160genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.51.1e-4371061100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    +Ca+C++lrr+CakdC++apyfp+++p kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la+
  MDP0000861160   7 PCASCRLLRRRCAKDCIFAPYFPSDDPYKFAIVHKVFGASNVSKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISFLQNQVSELQMQLAV 102
                    7**********************************************************************************************9 PP

         DUF260  97 lkee 100
                    +++e
  MDP0000861160 103 AQAE 106
                    9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.1156107IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-437104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGSGSSPCAS CRLLRRRCAK DCIFAPYFPS DDPYKFAIVH KVFGASNVSK MLQELPIHQR  60
GDAVSSLVYE ANARVRDPVY GCVGAISFLQ NQVSELQMQL AVAQAETLCF QMQQDPVAXP  120
TQIDQHHHQH QDHDQKSLLL SNSDFNSIPH QYFSSFASPS NVIQDPLKRE SLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-4821217128LOB family transfactor Ramosa2.1
5ly0_B4e-4821217128LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.14390.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008354824.21e-126LOW QUALITY PROTEIN: LOB domain-containing protein 12
SwissprotQ8LBW34e-80LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A498K7851e-126A0A498K785_MALDO; Uncharacterized protein
STRINGXP_008354824.11e-126(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.18e-71LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]