PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000803527
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 183aa    MW: 20480.3 Da    PI: 10.5737
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000803527genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.92.6e-1370126155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  s+n+ ++k+ + g ++++e+Aa  ++ a++k++g
  MDP0000803527  70 SIYRGVTRHRWTGRFEAHLWDkSSWNNiQNKKGRQGAYDSEEDAAHTYDLAALKYWG 126
                    57*******************7777**99988888********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576121No hitNo description
CDDcd000181.87E-1470134No hitNo description
SuperFamilySSF541715.04E-1570135IPR016177DNA-binding domain
PfamPF008475.4E-1070126IPR001471AP2/ERF domain
PROSITE profilePS5103218.14971134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1271134IPR001471AP2/ERF domain
SMARTSM003806.8E-1771140IPR001471AP2/ERF domain
PRINTSPR003676.9E-57283IPR001471AP2/ERF domain
PRINTSPR003676.9E-5116136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MKRSSSFSCS SLTSSSSSSS CAGPEIPKHN VQAEIQKPKP KRVRKNRKTA EAAAAEDNTP  60
KSGSGGRRSS IYRGVTRHRW TGRFEAHLWD KSSWNNIQNK KGRQGAYDSE EDAAHTYDLA  120
ALKYWGPATI LNFPFXFXAN LETYTKEIEE MQKATREEYL ASLRRLSNGF SRGVSKYRGV  180
AR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2885516e-37KM288551.1 Prunus sibirica transcription factor SaWRI1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008354875.11e-109PREDICTED: ethylene-responsive transcription factor WRI1-like
SwissprotQ6X5Y62e-67WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLM5X5F01e-78M5X5F0_PRUPE; Uncharacterized protein
STRINGBra003178.1-P3e-69(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98593241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.36e-58AP2 family protein