PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000778140
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 327aa    MW: 36248.6 Da    PI: 5.3084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000778140genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1855103355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  MDP0000778140  55 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAALSMKG 103
                    56******.**********965...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.6E-3454117IPR001471AP2/ERF domain
PROSITE profilePS5103220.94354111IPR001471AP2/ERF domain
CDDcd000188.19E-3054110No hitNo description
Gene3DG3DSA:3.30.730.107.9E-2955111IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2055112IPR016177DNA-binding domain
PRINTSPR003674.5E-85566IPR001471AP2/ERF domain
PfamPF008479.0E-1257103IPR001471AP2/ERF domain
PRINTSPR003674.5E-87793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSMSTSQALE KPFEAFEQGQ VQVDIAAVLQ RSTLTPSSQS GERRGRRKQA EPGRFLGVRR  60
RPWGRYAAEI RDPSTKERHW LGTFDTAEEA ALAYDRAALS MKGSQARTNF IYSDNTTFHS  120
LLSPFDVQTL LPQQSQFFTT QTAKQQLTNQ NSPPHHSNMF QSDQTQFQNP NNIRSSSSAH  180
HKDDECFFFS GNSSNSNSGY LACIVPDSCL RPPSDNDDPP NYTNSKALNI DQNCSFANPN  240
NSTSATLPLD VMNVQAALEA PNNNNGDHQI SCFDGFSHGF WDNQQPWEFN PMMTEDGCMG  300
ALYPIVENSS AYGSSSSFSC FGHSLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2045110571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the early stages of lateral root primordia formation (PubMed:17630277). Expressed in early floral meristem (stage 1 to 2) (PubMed:19482972). {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028946811.10.0ethylene-responsive transcription factor ERF086-like
SwissprotQ6J9Q23e-56ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLA0A498HSB30.0A0A498HSB3_MALDO; Uncharacterized protein
STRINGXP_009352329.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.11e-40ERF family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Chandler JW,Werr W
    DORNRĂ–SCHEN, DORNRĂ–SCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]