PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000753623
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 140aa    MW: 15798.4 Da    PI: 8.1231
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000753623genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26040.48.5e-132086161
         DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere.damssl 61
                   +C+ C+vlr++C++ C+l+ ++     p++q + + +++k+F+ + +l+++  +pe++r+  a++s+
  MDP0000753623 20 SCNXCRVLRKGCSDTCILRSCLywidsPEAQGNXTLFLAKFFSHNDLLSFVXVVPENQRPvSAVRSV 86
                   6*********************************************************851566665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.4E-92085IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MQQDMHTEVV PVLDRMVEMS CNXCRVLRKG CSDTCILRSC LYWIDSPEAQ GNXTLFLAKF  60
FSHNDLLSFV XVVPENQRPV SAVRSVRPHG EPGERSGGAS VEWELARVPV GGRYGAVQRR  120
FEAITGFYYA CLRRVFERV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.238575e-77root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498KND72e-83A0A498KND7_MALDO; Uncharacterized protein
STRINGXP_008363136.14e-50(Malus domestica)
STRINGXP_008373879.14e-50(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.17e-25LOB domain-containing protein 38