PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000737128
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 307aa    MW: 34512.3 Da    PI: 6.2327
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000737128genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-1887139456
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    + +++ eq+++Le+ Fe+ +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  MDP0000737128  87 KKRLNLEQVKTLEKSFEMGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 139
                    4568889*********************************************9 PP

2HD-ZIP_I/II1309.2e-4285176192
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    ekk+rl+ eqvk+LE+sFe+ +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lk+++dalk++n++L++++++L++el 
  MDP0000737128  85 EKKKRLNLEQVKTLEKSFEMGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKNKFDALKADNDALQAHNKKLQAELL 176
                    69**************************************************************************************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-1969143IPR009057Homeodomain-like
PROSITE profilePS5007117.281141IPR001356Homeobox domain
SMARTSM003891.2E-1784145IPR001356Homeobox domain
CDDcd000864.05E-1686142No hitNo description
PfamPF000461.7E-1587139IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1989149IPR009057Homeodomain-like
PRINTSPR000311.1E-5112121IPR000047Helix-turn-helix motif
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5121137IPR000047Helix-turn-helix motif
PfamPF021832.6E-15141181IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MKGVEGEGMQ WELGGEGEVR DGKDPDEWSG DLERICGGMP FMMKRSLSFS GVENNRCHHH  60
DQEAALHGGG GGDDDLSDDG SQMGEKKKRL NLEQVKTLEK SFEMGNKLEP ERKMQLAKAL  120
GLQPRQIAIW FQNRRARWKT KQLEKDYDVL KNKFDALKAD NDALQAHNKK LQAELLTLKS  180
KDSSNEGGFN FKKEIDQGSW SNGSENSFDH HHHHHHLNLE ISRTTATTSS PPSDSPHMNG  240
KNLFPPSSSS LMSASTTQLL QGSSRSDLQS LKLDQMIQDE GLCSMFNGID QEQQGFWPWP  300
EQQHFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.243140.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341550.10.0homeobox-leucine zipper protein HAT7
SwissprotQ8LC031e-71ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A498HJM90.0A0A498HJM9_MALDO; Uncharacterized protein
STRINGXP_008341550.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127133106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.12e-63homeobox 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]