PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000683814
Common NameLOC103401682
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 324aa    MW: 35744.1 Da    PI: 6.876
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000683814genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20135184255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  MDP0000683814 135 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAFKLRG 184
                    59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.47E-34134194No hitNo description
Gene3DG3DSA:3.30.730.102.7E-32135193IPR001471AP2/ERF domain
SMARTSM003801.8E-38135198IPR001471AP2/ERF domain
PROSITE profilePS5103223.235135192IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-23135193IPR016177DNA-binding domain
PfamPF008471.4E-14136184IPR001471AP2/ERF domain
PRINTSPR003672.9E-11136147IPR001471AP2/ERF domain
PRINTSPR003672.9E-11158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MATSIDLYSS STMTSDLSDP SREDQLMKAL MPYMKSASST SPSTSYTFPP QNNQNFNLYP  60
DFCSAPMISQ AGAIGLNQLT PSQILQIQSQ MILQQHQQKQ QISAFASSPA HTLKLLRPKA  120
VPMKQAGTPS KPTKLYRGVR QRHWGKWVAE IRLPRNRTRL WLGTFDTAEE AALAYDKAAF  180
KLRGDFARLN FPHLRHQGAL VCGDFGHYKP LHSSVDAKLQ AICQSLGANS TKQGNTGEPC  240
PVAETKPVVS APLEAKMDDS FKSELKSESE AFSSSSYSPS RSDESSSPES DITFLDFSDS  300
QWDEAENFGL EKYPSVEIDW SAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21134192160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.128170.0fruit| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324750.0GU732475.1 Malus x domestica AP2 domain class transcription factor (AP2D51) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288047.10.0ethylene-responsive transcription factor ERF060
SwissprotO656652e-83ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A1P8VHT60.0A0A1P8VHT6_9ROSA; DREB6.3
TrEMBLF8TVR40.0F8TVR4_MALDO; Ethylene response factor 4
STRINGXP_008338614.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-56related to AP2 4
Publications ? help Back to Top
  1. Akagi A,Dandekar AM,Stotz HU
    Resistance of Malus domestica fruit to Botrytis cinerea depends on endogenous ethylene biosynthesis.
    Phytopathology, 2011. 101(11): p. 1311-21
    [PMID:21809978]