PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000613011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 484aa    MW: 54177.9 Da    PI: 5.479
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000613011genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.4e-35161062101
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl k+y++++d++++e++sws+n++sf+v+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +++k+ll++i
  MDP0000613011  16 FLLKTYDMVDDSATDEIVSWSSNKKSFIVWNPPEFARVLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIQDQKHLLKNI 102
                    9****************************************************************999.........******************* PP

                    XXXX CS
   HSF_DNA-bind  98 krkk 101
                    +r+k
  MDP0000613011 103 HRRK 106
                    **98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-3712105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.43E-3512105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.2E-6012105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEGPSTAGGG GGPAPFLLKT YDMVDDSATD EIVSWSSNKK SFIVWNPPEF ARVLLPTYFK  60
HNNFSSFIRQ LNTYGFRKID PERWEFANED FIQDQKHLLK NIHRRKPIHS HSNPQGSMVD  120
SERAALDDEI EKLSHDKAAL EANISRFKQQ RSAAKLQLED LTQRVNGMEQ RQKNLVTFLD  180
RAVHNPNFVE HLTRKIESMD FSAYHKKRRL PDIDHLQPVV ENGFVDNRSS SRSEFGNIFH  240
QDFSSKLRLE LSPAVSDMNL VSRSTQSSNE DGGSSTRKIS EELKGAQMRP EGVLFAPETL  300
ELSDTGTSFA FKMDSLLSRK APTVGSPRRH SLQPGLPSNE EGDGHISCHL NLTLASTPLQ  360
VNNSPCLATV PQVGQDINES AASELNENGK DSDLRAFTNK NIADNDKLKT SSQEATHNNQ  420
APPLVPVRVN DVFWEQFLTE RPGCSENEEA SSDYRGNPFD EQDDGRLDHG MSRNVEDAET  480
LTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-22310517129Heat shock factor protein 1
5d5v_B5e-22310517129Heat shock factor protein 1
5d5v_D5e-22310517129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR1321930.0KR132193.1 Eriobotrya japonica heat shock factor 2 (HSF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338589.10.0heat stress transcription factor A-5-like
SwissprotQ94BZ51e-165HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A172C4J70.0A0A172C4J7_9ROSA; Heat shock factor 2
STRINGXP_008338589.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-167HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]