PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000591819
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 49aa    MW: 5371.35 Da    PI: 8.6278
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000591819genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26030.21.3e-09347241
         DUF260  2 CaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasn 41
                   C +C+vl+++C++ C+l+ ++     p++q +++ +++k+F +s+
  MDP0000591819  3 CKGCRVLQKGCSDTCILRSCLywinsPEAQGNATLFLAKFFCRSH 47
                   *****************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508918.654148IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-6347IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 49 aa     Download sequence    Send to blast
MGCKGCRVLQ KGCSDTCILR SCLYWINSPE AQGNATLFLA KFFCRSHL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.238571e-50root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354105.16e-23PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9SN237e-18LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A2C9U0K73e-20A0A2C9U0K7_MANES; Uncharacterized protein
TrEMBLA0A2C9VYR33e-20A0A2C9VYR3_MANES; Uncharacterized protein
STRINGXP_009354105.12e-22(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-20LOB domain-containing protein 38