PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000539118
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YC
Protein Properties Length: 252aa    MW: 28006.5 Da    PI: 6.3681
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000539118genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.23.1e-55701731101
          NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                    ql++fw +q   i++++dfknh+lPlarikki+kadedv+misaeaPv++++ace+filelt+rsw+h+eenkrrtl+k+diaaa+trtdifdflv
  MDP0000539118  70 QLQKFWGEQhkeIDQTNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTMRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLV 165
                    89****9998889*********************************************************************************** PP

          NF-YC  94 divprdel 101
                    divpr++l
  MDP0000539118 166 DIVPREDL 173
                    *****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.2E-3444164IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.4E-3884156IPR009072Histone-fold
PfamPF008082.0E-2192155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDQQGHGHPA TMGVAGTAAQ ASYGVNPYGS VGMMQSPTQP AGSAASSQLA QHQLAYQHIH  60
QQQQQQLQQQ LQKFWGEQHK EIDQTNDFKN HSLPLARIKK IMKADEDVRM ISAEAPVIFA  120
RACEMFILEL TMRSWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR EDLKDEVLAS  180
IPRGGNPPVG GPSDGVPYYY MPPQHASQVG APAMIVGKPV MDQNLYGQQA HPYIAQPTWP  240
QQQQHPHDDL E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C4e-41561704119HapE
4g92_C4e-41561704119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.132700.0bud| fruit| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008351229.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_008390839.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ8L4B21e-82NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLM5XZG01e-144M5XZG0_PRUPE; Uncharacterized protein
STRINGVIT_05s0020g02790.t011e-119(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.44e-78nuclear factor Y, subunit C9