PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000523096
Common NameTCP13
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 322aa    MW: 34315.7 Da    PI: 9.1072
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000523096genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.42.5e-3869153286
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                    a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i + tgt++++as+   a+ s+s+++  s
  MDP0000523096  69 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIVATTGTGTIPASALaAAGGSVSQQG-TS 153
                    789******************************************************************99854444444433.22 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-3074251IPR005333Transcription factor, TCP
PROSITE profilePS5136926.88575129IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDPKGSKQTQ DIPSFLSLPP QSQPQPEQQQ QPQQQPQPNN NMSDNKPAEI KDFQIVIADK  60
DESGKKQLAP KRSSNKDRHT KVEGRGRRIR MPALCAARIF QLTRELGHKS DGETIQWLLQ  120
QAEPSIVATT GTGTIPASAL AAAGGSVSQQ GTSLSAGLHQ KIDELGGSSG GRTSWAMVGG  180
NLGRPHVAGV GGLWPPVSSF GFQSSSGPPS ATTNLGTESS NYLQKIGFPG FDLPVSNXGP  240
MSFTSILGGG NQQQQQQLPG LELGLSQDGH IGVLNSQALS QIYQQMGHAR VHQQPPQHHH  300
QQHHHQQQQP PSKDDSQGSG Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.113310.0bud| fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00636PBMTransfer from Glyma.19G095300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346779.11e-161PREDICTED: transcription factor TCP20-like
SwissprotQ9LSD51e-80TCP20_ARATH; Transcription factor TCP20
TrEMBLD9ZJC91e-163D9ZJC9_MALDO; TCP domain class transcription factor
STRINGVIT_14s0068g01690.t011e-151(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33393269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.12e-59TCP family protein