PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000518442
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YC
Protein Properties Length: 246aa    MW: 27462.5 Da    PI: 6.3679
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000518442genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.33e-55721751101
          NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                    ql++fw +q   i++++dfknh+lPlarikki+kadedv+misaeaPv++++ace+filelt+rsw+h+eenkrrtl+k+diaaa+trtdifdflv
  MDP0000518442  72 QLQKFWGEQhkeIDQTNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTMRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLV 167
                    89****9998889*********************************************************************************** PP

          NF-YC  94 divprdel 101
                    divpr++l
  MDP0000518442 168 DIVPREDL 175
                    *****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.7E-3454166IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.2E-3886158IPR009072Histone-fold
PfamPF008081.9E-2194157IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDQQGQGHGH PATMGVAGTA AQASYGVNPY GSVGMLQSPT QPAGPSAPSQ LAQHQLAYQH  60
IHQQQQQQLQ QQLQKFWGEQ HKEIDQTNDF KNHSLPLARI KKIMKADEDV RMISAEAPVI  120
FARACEMFIL ELTMRSWNHT EENKRRTLQK NDIAAAITRT DIFDFLVDIV PREDLKDEVL  180
ASIPRGGNLP VGXPSDGVPY YYMPPQHAPQ VGAPGNQNMY GQQTHAYIAQ PTWPHQQQQP  240
HEDIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-41581724119HapE
4g92_C3e-41581724119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144150RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.132700.0bud| fruit| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008340921.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ9ZVL39e-78NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLM5XZG01e-134M5XZG0_PRUPE; Uncharacterized protein
STRINGVIT_05s0020g02790.t011e-112(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.32e-75nuclear factor Y, subunit C3