PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000515080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 531aa    MW: 55579 Da    PI: 6.8748
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000515080genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1325.8e-411222622116
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 
                    +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+i++ tgt++++a+++  + s +ss+s+ s++        
  MDP0000515080 122 PVAKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIATTGTGTIPANFStLNISLRSSGSSLSAPpsksaphs 217
                    5789*****************************************************************999877777777775444466667788 PP

            TCP  89 .........................kaaksaakskksqksaasalnlakesra 116
                                             +        +++q++++++ + +++ ++
  MDP0000515080 218 fhgalalthrphydegfahsgllgfH--------QQPQQQQQQHPQHHHQPHQ 262
                    89999999999999987655444432........2222222223333333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-39127261IPR005333Transcription factor, TCP
PROSITE profilePS5136927.265128182IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MASDLLQEGE EEEGHPSMGS ISIQAGLTTT SHSTPPPPTT SAPSSASFSS SSSTSSPSST  60
STSTAPPQLV DASLAIATRS DPHPPTRPGS LLDSAKNNQI QQQLTISPAT TPPPAAAATT  120
TPVAKRSTKD RHTKVEGRGR RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPSII  180
ATTGTGTIPA NFSTLNISLR SSGSSLSAPP SKSAPHSFHG ALALTHRPHY DEGFAHSGLL  240
GFHQQPQQQQ QQHPQHHHQP HQSPLMTADE IAEALPSGGG DSGGGGGGES TENYMRKRFR  300
EDLFKDDNQE RGESGSGGGV GSPSRNKAFK GGSSCGLQLP KQQQQGEELG SYSSGVLRPS  360
NILPATAMWA VAPAPTSGAG STFWMLPVTA GSAVPSMATG TSGAGPSEAT QMWTFPSATA  420
SHVSTLQAPL HFMPRFNLPG SLEFQQAGSR GSPLQLGSML MQQQPSQHLG LGVSESNLGM  480
LAALNAYSRG GLNMNSDHQQ NHQHPLDHHQ QQHHQHQTTD SGDEGPNSSQ *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.286570.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009345851.10.0PREDICTED: transcription factor TCP8-like
RefseqXP_009345828.10.0PREDICTED: transcription factor TCP8-like
TrEMBLM5XQQ40.0M5XQQ4_PRUPE; Uncharacterized protein
STRINGVIT_12s0035g00690.t011e-176(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.18e-64TCP family protein