PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000496268
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 388aa    MW: 44186.4 Da    PI: 10.629
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000496268genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.12.3e-10306325322
                    -SS-EEEEEEE--TT-SS-E CS
           WRKY   3 DgynWrKYGqKevkgsefpr 22 
                    D y+WrKYGqK++kgs++pr
  MDP0000496268 306 DDYSWRKYGQKPIKGSPHPR 325
                    99*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.0E-17256302IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.2E-10292325IPR003657WRKY domain
PROSITE profilePS5081112.174299355IPR003657WRKY domain
SuperFamilySSF1182901.02E-7302325IPR003657WRKY domain
SMARTSM007746.2E-4304338IPR003657WRKY domain
PfamPF031061.9E-6306325IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEKLNNXFFT LMSRGPEDME EVEEANKAAV ESCHRVLSIL SQPQDQVQYR NLMVETGXAV  60
SRFKKVVSIL NTGLGHARVR KLKKLQIPFP ERILLDNPNS IGDRPSKTPH FLQSRFPENP  120
TQDLSLDVKS SLCLGNPSLE LSANGKTPIH PAQQVPPAQY HFFHQQQQQQ HQQQQQQQQR  180
MLLQQQQMKP QTEMMYRRSN SGINLNFDSS SYTPTMSSTR SFISSLSIDG SVANFDGNSF  240
HLIGAPLSSD QNSHHKRKCS ARGDDGSVKC VGSSGRCHCS KKRKHRVKRS IKVPAISNKL  300
ADIPPDDYSW RKYGQKPIKG SPHPRLSRAM RSPLKFEFIF LPXTNRGMLE NRFLEGQWRA  360
VAVMRRKSTX LDEVKHTQYF FKKINNV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.136730.0bud| fruit| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008372323.20.0probable WRKY transcription factor 21
RefseqXP_028958513.10.0probable WRKY transcription factor 21
SwissprotO043365e-89WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A498JT090.0A0A498JT09_MALDO; Uncharacterized protein
STRINGXP_008372322.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.24e-62WRKY DNA-binding protein 39