PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000487015
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 289aa    MW: 31405.5 Da    PI: 8.1087
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000487015genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.54.8e-2966167197
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C++ C+l+ ++     p++q +++ +++k+FG+s +l++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q++
  MDP0000487015  66 SCNGCRVLRKGCSDTCILRSCLcwidsPEAQGNATLFLAKFFGRSDLLSFVSAVPENQRPTLFQSLLFEACGRTVNPVNGAVGLLSSGNWHVCQSA 161
                    6*********************9999999******************************************************************9 PP

         DUF260  92 aelall 97 
                    ++++l 
  MDP0000487015 162 VDTVLS 167
                    998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.76765171IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-2466163IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MLNQRQKPDQ TPRSDGQIGS EIVAETRSRS VSPRVWKICL DKXVVGPHPM STVICKMEAD  60
RTVEMSCNGC RVLRKGCSDT CILRSCLCWI DSPEAQGNAT LFLAKFFGRS DLLSFVSAVP  120
ENQRPTLFQS LLFEACGRTV NPVNGAVGLL SSGNWHVCQS AVDTVLSGGA LRPLPAFTTP  180
ALDESSDAFS RGACTPKNRY CPSAAAYYDA ERIQPFEAAG LSLRPNLVAA ERGRGKGMWI  240
CVSAAMDQRR RDTVSFDSEE SVMTTTTTRT FESGGGDLKD RKLLNLFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.238571e-113root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008377972.11e-164LOB domain-containing protein 37-like
TrEMBLA0A498J9U71e-163A0A498J9U7_MALDO; Uncharacterized protein
STRINGXP_008365099.11e-164(Malus domestica)
STRINGXP_008377972.11e-164(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-61LOB domain-containing protein 38