PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000442611
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 350aa    MW: 38232.2 Da    PI: 7.1786
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000442611genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.45.3e-34221382113
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........................ssssas 71 
                    +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+++                          ++++ +
  MDP0000442611  22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELppwhpittsnhaaxaddpfrssnpnpNQNP-N 116
                    79**************************************************************888877665555555554443322211111.1 PP

            TCP  72 ec.eaesssssasnsssgkaaksaakskksqksaasalnlake 113
                    e+                          ++q+++++  n+  e
  MDP0000442611 117 EMvI---------------------AAAEQQSESSAGYNFXFE 138
                    1111.....................111111111111222221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-3022129IPR005333Transcription factor, TCP
PROSITE profilePS5136932.7542482IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGMKGCGGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKSSID KLAELPPWHP ITTSNHAAXA DDPFRSSNPN PNQNPNEMVI  120
AAAEQQSESS AGYNFXFELH RQRQSDNESN FNIPPSLDSD NIADTMKSFF PTNTSSNAAA  180
ASSVVDFQSY APDPHLISTT TQDLGLSLHS FQDQSLNIHH NHTHTQQSSQ TLFAAAMGIG  240
LDSSSYQRMV AWSNENRGLD GGFVFNSHSH SYAQPQPHHH GGTLQSSFTP SVSARAWQQQ  300
QQHSSIFGTR FGASNGSSPV FCIQGEEAEN GVVSDRTAST SSPNSTRQL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.144820.0bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5010640.0KM501064.1 Malus domestica TCP domain-containing protein 4 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008381571.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR56e-68TCP4_ARATH; Transcription factor TCP4
TrEMBLA0A0U2D5T40.0A0A0U2D5T4_MALDO; TCP domain-containing protein 4 (Fragment)
STRINGPOPTR_0013s12370.18e-94(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-65TCP family protein