PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000430686
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 396aa    MW: 44320 Da    PI: 7.0548
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000430686genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.91.2e-3138136199
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    aCaaC+++r++C++dCv+apyf +++ ++f++vh++FG+sn++kllk+l++++ r +a++s ++eA ++ +dPv+G +g ++kl+++ e l++ l+
  MDP0000430686  38 ACAACRHQRKRCEEDCVMAPYFTNKD-EDFKAVHRIFGVSNMTKLLKQLEDQNhRGTAVQSFIWEAYMWNQDPVNGPLGKYRKLERENELLRNALN 132
                    7********************98776.99********************877769************************************99999 PP

         DUF260  96 llke 99 
                    + ++
  MDP0000430686 133 EEQK 136
                    8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.84737138IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3038134IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MESRKRASLW KVTSMVYYIS MSMGSSSSAG EPVAGRHACA ACRHQRKRCE EDCVMAPYFT  60
NKDEDFKAVH RIFGVSNMTK LLKQLEDQNH RGTAVQSFIW EAYMWNQDPV NGPLGKYRKL  120
ERENELLRNA LNEEQKALAL AASTTEEEPL ALGQENNNNS GNIADDVEGV IPIYGSSLNY  180
GYANQSLAID GSTNGTYTNL LQGQEATEMS QGQQVLGQGR GFHHGVVLVK QEAPDQRRVV  240
GLGSSSEHFG SVGLMSSPTF QYQRLMQFEG LPNIGPHING HGRGQVVFDP SVGQEQQRAL  300
GLVGAPQIGP NFGDFSLEGH RRSTITQRHD DRYSPYHHRQ PQQQQQHHPV NAQRQAMNQG  360
QNHHNFQRYS SLHNFHSYDN VQDAEQFNQV KSERP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-15251384111LOB family transfactor Ramosa2.1
5ly0_B6e-15251384111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352961.10.0PREDICTED: LOB domain-containing protein 30-like
TrEMBLA0A498IVF30.0A0A498IVF3_MALDO; Uncharacterized protein
STRINGXP_009352961.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF147861315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.14e-20LOB domain-containing protein 2