PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000420968
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 160aa    MW: 17177.7 Da    PI: 7.958
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000420968genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP43.61.1e-1348537103
            TCP  37 deLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg....................kaaksaakskksqks 103
                    d+LG+d++sk+++WL+++ak+ai+el +++s ++++   +a+    +++n+s++                            s  s+++
  MDP0000420968   4 DRLGYDRPSKAVDWLIKKAKAAIDELEELPSWNPHSIstTAAXPAMETQNPSATxihcfaavdaigsanrrtmvG-------SGVSEQQ 85 
                    89***************************4444433323222223333323332444666666666544433331.......2222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136915.147129IPR017887Transcription factor TCP subgroup
PfamPF036345.6E-9448IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MRRDRLGYDR PSKAVDWLIK KAKAAIDELE ELPSWNPHSI STTAAXPAME TQNPSATXIH  60
CFAAVDAIGS ANRRTMVGSG VSEQQFAQNP NSNSTFLPPS LDSDAIAXTI KSFFPMGASA  120
VAAAAESPSS TIQFRQNYPP DLLSKAKLPC PPLTFCCRH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.303430.0bud| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5310220.0AB531022.1 Malus x domestica MdTCP4B mRNA, complete cds.
GenBankKM5010660.0KM501066.1 Malus domestica TCP domain-containing protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008382081.19e-86PREDICTED: transcription factor TCP4-like
RefseqXP_009335205.11e-85PREDICTED: transcription factor TCP4-like
TrEMBLD9ZJD01e-85D9ZJD0_MALDO; TCP domain class transcription factor
STRINGPOPTR_0001s38480.17e-36(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.35e-28TCP family protein