PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000312617
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 386aa    MW: 41824.7 Da    PI: 9.0663
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000312617genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.11.5e-1522114272
       trihelix   2 WtkqevlaLiearremeerlrrgk......................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                    Wt  e++ Liea++ ++er  +++                       ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk++e e+k t
  MDP0000312617  22 WTVGETMILIEAKKMDDERRMKRSgggeggssssggtdqttrsmgkPAELRWKWVEDYCWKKGCLRSQNQCNDKWDNLMRDYKKVREYERKIT 114
                    *************96666555543355566667777777777777799*****************************************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.22614100IPR017877Myb-like domain
PfamPF138371.4E-1121112No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MAGQGGNGTS SVIMRDYRKG NWTVGETMIL IEAKKMDDER RMKRSGGGEG GSSSSGGTDQ  60
TTRSMGKPAE LRWKWVEDYC WKKGCLRSQN QCNDKWDNLM RDYKKVREYE RKITNVGEGK  120
GEEGRASYWK LEKNERKERN LPTNMVLQIY EALVDVVERR EAAGGGGYQI RGHQVVGGAS  180
VSGSNVGISP NIGYGLERPI ISTTGVHQQP SSSLPPPPPP VLQHHHHQIS VPTIAALPLL  240
PPAPLAAQPP PALQYAQVMP TVDSDTSEHS DSPAKRRRRA SGRGGGGGGG DQGGTSGTVS  300
ASTSSEVGTA IAGGASVIAE ALQGCEEREE RRHREMLSLH ERRLQIEETK TEINRQGING  360
LIDAINKLAN SIHDLASNKN QQPPPN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008358583.10.0uncharacterized protein LOC103422312 isoform X1
TrEMBLA0A498IYR30.0A0A498IYR3_MALDO; Uncharacterized protein
STRINGXP_008358583.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-55Trihelix family protein