PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000302966
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 651aa    MW: 74300.3 Da    PI: 8.528
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000302966genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind96.62.6e-30141122102
                    HHHHHHHHHCTG.......GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
   HSF_DNA-bind   2 Flkklyeilede.......elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                    Fl+k++++le++         ++++sw+ +g+ f+v+ + +f++ +LpkyFkh+nf+SF+RQLn+YgFkk++ +          weFkh++F+kg 
  MDP0000302966  14 FLSKTFDLLEEQdvggddgGKRNTVSWNVEGTGFIVWSPADFSELLLPKYFKHNNFSSFIRQLNTYGFKKTSPKL---------WEFKHEKFQKGC 100
                    9*********55555555599*************************************************99876.........************ PP

                    XXXXXXXXXXXX CS
   HSF_DNA-bind  91 kellekikrkks 102
                    +++l +i rkk 
  MDP0000302966 101 RHMLVEITRKKC 112
                    *********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.7E-324105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-3810110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-2311110IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.9E-2614110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-95971IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-97284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE profilePS513755.623215249IPR002885Pentatricopeptide repeat
SuperFamilySSF484527.59E-5268324IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.109.5E-13269439IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.975284318IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.1E-4287317IPR002885Pentatricopeptide repeat
PfamPF015350.0018287316IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.547319353IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.7E-4322354IPR002885Pentatricopeptide repeat
PfamPF130416.9E-8322365IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.52354384IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.6E-4356390IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.412390420IPR002885Pentatricopeptide repeat
SuperFamilySSF484527.59E-5397462IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.415425455IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.305460494IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.96495529IPR002885Pentatricopeptide repeat
PfamPF015350.096501526IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.109.5E-13510571IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF484527.59E-5512562IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513756.171530564IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.437571601IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.109.5E-13603622IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.448605642IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MAETSSRTRS AAPFLSKTFD LLEEQDVGGD DGGKRNTVSW NVEGTGFIVW SPADFSELLL  60
PKYFKHNNFS SFIRQLNTYG FKKTSPKLWE FKHEKFQKGC RHMLVEITRK KCEPSAFPAY  120
LKASEESEST STALAAAEEN NCLLLMEENK NLRKQQLELQ LFARTLIRNA MASRSYYTSR  180
TKKPTLYNKI SPLGNPSLNV VPELDDWVYN GNKVRVAELQ RIIHDLRKRK RFSQALQISE  240
WMNQKGVCIF SPVEHAVQLD LIGKVRGFDS AEEYFNNLRD EDKNIKTYGA LLNCYVRQRQ  300
VDKSLAHLRK MKGMGFVSSP LTYNDIMCLY TNVGQHEKVP GVLAEMKENN VPPDNFSYRI  360
CINSYGVRSD LEGMEKVFKE MESQPRIVMD WNTYAVVANF YVKEGQTDKA MNALXKSEER  420
LDNKDGLGYN HLISLYASMG SKGEVLRLWG VEKSACKRCI NRDYMGMLXS LVRLXELDEA  480
EKVMEEWELS GNCYDFRVPQ TVITGYTVKG LYERAEALLE DLMEKGKATT ARSWETVAAG  540
YVNKGEMKKA FKCLKVALRL SSEKRWKPNL GVVTLTTLLS WLGDEGSAED AEAFVGALRK  600
VIPVNKHMYH ALLKAYVREG KEVNSVLDRM KADKIDGDGE ETEKILAMRE N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A4e-2421161811413pentatricopeptide repeat protein dPPR-U10
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9865258e-33FJ986525.1 Corylus avellana clone B728 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008371361.20.0pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like isoform X1
SwissprotQ84JR30.0PP334_ARATH; Pentatricopeptide repeat-containing protein At4g21705, mitochondrial
TrEMBLA0A498JYW40.0A0A498JYW4_MALDO; Uncharacterized protein
STRINGXP_008371361.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF353522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-33heat shock transcription factor B2A
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]