PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000297698
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 356aa    MW: 39961.6 Da    PI: 8.5568
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000297698genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2507.1e-1642101155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  MDP0000297698  42 SRFRGVSRHRWTGRFEAHLWDkLSWNStlkKKgKQVYLGAYDEEESAARAYDLAALKYWG 101
                    789******************888899996448*************************98 PP

2AP256.66.4e-18144195155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg++gt eeAa+a++ a+ +++g
  MDP0000297698 144 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYRG 195
                    89****99**********99966...3.6*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-1642110IPR016177DNA-binding domain
PfamPF008471.5E-1242101IPR001471AP2/ERF domain
CDDcd000184.09E-1842111No hitNo description
Gene3DG3DSA:3.30.730.101.0E-1443109IPR001471AP2/ERF domain
SMARTSM003801.2E-2243115IPR001471AP2/ERF domain
PROSITE profilePS5103219.00643109IPR001471AP2/ERF domain
PRINTSPR003672.4E-54455IPR001471AP2/ERF domain
CDDcd000182.64E-24144205No hitNo description
PfamPF008472.3E-13144195IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18144205IPR016177DNA-binding domain
PROSITE profilePS5103218.742145203IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-18145204IPR001471AP2/ERF domain
SMARTSM003804.8E-26145209IPR001471AP2/ERF domain
PRINTSPR003672.4E-5185205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEFMLRRRRD PPAVGGNRES QQQLAQKPAD QTSAATTVKR SSRFRGVSRH RWTGRFEAHL  60
WDKLSWNSTL KKKGKQVYLG AYDEEESAAR AYDLAALKYW GASTFTNFXI SDYDNEIEIM  120
QSVTKEEYLA SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYGTQE  180
EAARAYDIAA IEYRGINAVT NFDLSSYITW LKPRADXVIA TPQVPEAVTK PKNXPFAASS  240
YIXTEXSPFS LTNPFASDYX HSPRKQEVIG SSNSSSPTAL GLLLQSSVFR ELVQKNSSFS  300
EDDSTDGEEP KNQPQADSDD EFGGIIYDGV GGSPFVSYSN TDGDFTWNSF TSSIFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16975LKKKGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008348219.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ6X5Y61e-91WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLM5X9330.0M5X933_PRUPE; Uncharacterized protein
STRINGPOPTR_0017s11470.11e-158(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.36e-93AP2 family protein