PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000296123
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 341aa    MW: 38642.9 Da    PI: 8.033
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000296123genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.31.7e-171353343
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                   i n+  r+vtf kRrng+lKKA EL +LCd++v+ i++ ++
  MDP0000296123 13 IPNEXSRKVTFRKRRNGLLKKAVELHTLCDVKVCTIVYEKK 53
                   78999********************************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.7E-16164IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.516355IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-12525IPR002100Transcription factor, MADS-box
CDDcd002662.00E-18587No hitNo description
SuperFamilySSF554551.09E-18583IPR002100Transcription factor, MADS-box
PfamPF003191.4E-171357IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-122540IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-124061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGRSKSKLPL ELIPNEXSRK VTFRKRRNGL LKKAVELHTL CDVKVCTIVY EKKSKGKVSR  60
AATFPAEFKD VKEIIDMYKS NSSKVKKVQS LGDFYATRTV QVKEEFGKLR SKSCEEKYPA  120
WEDRLDAFSV EQMLDLLKNL ENKIVDTHKM HGMMKESKQI VVQETIPPKE EIVVNIQILL  180
KATFKSNREY SQMQSAGTSW ANNNNIQYIC SSATISNSNI RTSTWDIPAP YGNMDGNATF  240
CNPMQQQPCM YDSIFSSAAS QQQEAAVVPS VENPNPIGIV PLSVSYDQPM LSLTMQPSYL  300
ECPISASAFG LSSEYDQQFG AFQSQHMFYD NVFFDNMAHF E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028963385.10.0agamous-like MADS-box protein AGL11
TrEMBLA0A498J3M00.0A0A498J3M0_MALDO; Uncharacterized protein
STRINGXP_008365470.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.14e-14M-type_MADS family protein