PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000294210
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 394aa    MW: 43454.2 Da    PI: 6.5531
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000294210genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601011.1e-3118116199
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    aCaaC+++r++C++dCv+apyf +++ ++f+++hk+FG+sn++kllk+l++++ r +a+++ ++eA ++ +dPv+G +g+++kl+++ e l++ l+
  MDP0000294210  18 ACAACRHQRKRCEDDCVMAPYFTNKD-EDFKAAHKIFGVSNMTKLLKQLDDQNhRGTAVQTFMWEAYIWKQDPVNGPLGMYRKLERENELLRNALN 112
                    7********************98776.99********************77766*************************************99999 PP

         DUF260  96 llke 99 
                    + ++
  MDP0000294210 113 EEQK 116
                    8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.6117118IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-3018114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MSMGSSSSAG ELIACRHACA ACRHQRKRCE DDCVMAPYFT NKDEDFKAAH KIFGVSNMTK  60
LLKQLDDQNH RGTAVQTFMW EAYIWKQDPV NGPLGMYRKL ERENELLRNA LNEEQKALAL  120
AFAASTMEEE PLALDQENHS NSGNINDDVE GVIPIYGNAR NYGYANQSLA IDGSTNGTYT  180
KLLQGQEATE MSQEQQVLGQ GRGFHHGAAL AKQQARDQQG VVGLDSSAGQ FGMVGLMSTL  240
QSQRPMQFEG RPDIGPYMYG QGRGQVVFDP SVGQGQQRAL GSAGAAQIGP HFGDFSLLGH  300
TRSAITQSPY SPYHHQQPHH PVHAQRLVMS QGQNHPNFQQ YSSLNNCHNY DNVQVPHSRW  360
LTSFATSTVF QTSEDPSGSC STTLLSIETV KLWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-141913412126LOB family transfactor Ramosa2.1
5ly0_B1e-141913412126LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352961.11e-180PREDICTED: LOB domain-containing protein 30-like
TrEMBLA0A498JVM60.0A0A498JVM6_MALDO; Uncharacterized protein
STRINGXP_008371704.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF147861315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16530.13e-13ASYMMETRIC LEAVES 2-like 9