PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000287973
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 710aa    MW: 78287.7 Da    PI: 7.1665
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000287973genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.4e-11237293155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  MDP0000287973 237 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 293
                    57*******************4444.2455535555.779999**************98 PP

2AP246.78.1e-15336387155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  MDP0000287973 336 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 387
                    57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-15237303IPR016177DNA-binding domain
PfamPF008471.2E-8237293IPR001471AP2/ERF domain
CDDcd000182.41E-19237303No hitNo description
PROSITE profilePS5103217.319238301IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-12238302IPR001471AP2/ERF domain
SMARTSM003801.1E-22238307IPR001471AP2/ERF domain
PRINTSPR003674.7E-6239250IPR001471AP2/ERF domain
CDDcd000181.17E-24336395No hitNo description
SuperFamilySSF541711.63E-17336396IPR016177DNA-binding domain
PfamPF008471.0E-9336387IPR001471AP2/ERF domain
PROSITE profilePS5103219.045337395IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-18337395IPR001471AP2/ERF domain
SMARTSM003802.4E-33337401IPR001471AP2/ERF domain
PRINTSPR003674.7E-6377397IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
ADWNMNSPDS TNYKFTSDHL SMLNSCNTLN LENHQNRHQQ QPKLENFLGR HSFIADHPDH  60
IQSSTSSAHA YNSKNTASIN TTDNIFTRTV SSLQLPLEIS DPTNVINGDG AVGNININSS  120
TSNIGLSMIK TWLRNQPASQ LQEMNKNDVN GIGVSNTSTS TSSAQTLSLS MSTAGATTAG  180
DQTCSSDRDR DSNKQAIIRT AAPAATIQSG IDNQTSIATA IEAVPRKSID TFGQRTSIYR  240
GVTRHRWTGR YEAHLWDNSC RREGQTRKGR QGGYDKEEKA ARAYDLAALK YWGTTTTTNF  300
PISNYEKEVD EMKHMTRQEY VASLRRKSSG FSRGASIYRG VTRHHQHGRW QARIGRVAGN  360
KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFDMTRYD VKSILESSTL PIGGAAKRLK  420
DVEQAHHQHL HEMTLLADGH NRSTMDDQRE KLMMMNTSSN SLDQYHQQLI NGDHHGMRIN  480
NVYGTGAGWP TLAFNQAATA VAHQAAVPPF GMHYYSSVPY NSNGGQRVWC KQEQDTNSQS  540
FYQPQDHHRQ DLHHHQLLQL GSTHNFFQPV NLMGNSTTDS MEHSSGSNSV IYNGTTAGDH  600
GGYIIPMGTA IANDHENNSN AFGNGSSDHD QVKPALGYEN AFGSSSTTTT VDAYNHAKSL  660
YYLPVQAPQS SSVSSIGVST KGSSEYDNWV PTAVPTSTHN MAPFTVWNDT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4296730.0KC429673.1 Rosa canina BBM1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008355860.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM1 isoform X1
TrEMBLM5W5M30.0M5W5M3_PRUPE; Uncharacterized protein
STRINGPOPTR_0010s18840.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-125AP2 family protein