PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000286322
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 419aa    MW: 47184.9 Da    PI: 4.7671
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000286322genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.5e-1570129155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  MDP0000286322  70 SRFRGVSRHRWTGRFEAHLWDkLSWNVtqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 129
                    789******************888855555447*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.33E-1670139IPR016177DNA-binding domain
CDDcd000184.32E-2070139No hitNo description
PfamPF008471.4E-1270129IPR001471AP2/ERF domain
PROSITE profilePS5103219.54671137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-1571138IPR001471AP2/ERF domain
SMARTSM003809.3E-2471143IPR001471AP2/ERF domain
PROSITE profilePS510329.256155244IPR001471AP2/ERF domain
SMARTSM003800.0063207250IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-6218245IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-5218246IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MELMMVKNEE NPGRRRLSAA DREVQAARCV KRRRRDPPAV AVSSDNNQSE LQLXQKPADQ  60
TPATTMKRSS RFRGVSRHRW TGRFEAHLWD KLSWNVTQKK KGKQVYLGAY DEEESAARAY  120
DLAALKYWGA STFTNFPISD YEKEIEIMQS VXKEEYLASL RRYDFKHLFA VRLLQFGISL  180
IXKKAVDFQE VYQSTEELQG TITMXDGKQE SEEFSETSTQ EEAARAYDIA AIEYRGINAV  240
TNFDLSSYIR WLKPKAGDTX ATQELEAVTX PQNMXFMXNG YIPADETSFS HTNPFASDYL  300
NSPXNQEVTR SSTNLNTGSK SSSPTALGLL LQSSIFRELV QKNSNLSEDD STDDEEPKNQ  360
PQAGSDDEYG GIFYAGTGEN PLVCSSGTDG DNPWNNIAST ILLNQPTKAN ASDSLFFFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11334RRRLSAADREVQAARCVKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008379335.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLM5X9330.0M5X933_PRUPE; Uncharacterized protein
STRINGPOPTR_0017s11470.11e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.36e-49AP2 family protein