PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000276921
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GeBP
Protein Properties Length: 495aa    MW: 53727.4 Da    PI: 10.4781
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000276921genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57343.96.7e-142484898
         DUF573 48 kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98
                   +v+k+ql +KirrLKkK++++vkk    k+++ +k+hdqk+f+lskk+Wgs
  MDP0000276921  2 DVNKTQLQDKIRRLKKKYETNVKK----KKFNPTKPHDQKVFDLSKKVWGS 48
                   89**********************....99999****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.6E-14247IPR007592Protein of unknown function DUF573
SMARTSM004146.6E-78367487IPR002119Histone H2A
CDDcd000744.66E-69372484No hitNo description
Gene3DG3DSA:1.10.20.101.4E-61372486IPR009072Histone-fold
PfamPF001255.4E-13376453IPR007125Histone H2A/H2B/H3
PRINTSPR006205.8E-51378400IPR002119Histone H2A
SuperFamilySSF471131.65E-42380484IPR009072Histone-fold
PROSITE patternPS000460386392IPR032458Histone H2A conserved site
PRINTSPR006205.8E-51407422IPR002119Histone H2A
PRINTSPR006205.8E-51422435IPR002119Histone H2A
PRINTSPR006205.8E-51436450IPR002119Histone H2A
PfamPF162115.8E-18456489IPR032454Histone H2A, C-terminal domain
PRINTSPR006205.8E-51464482IPR002119Histone H2A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
VDVNKTQLQD KIRRLKKKYE TNVKKKKFNP TKPHDQKVFD LSKKVWGSSS SGEGSSGVSG  60
VSEQPKSNGK VRNTKTLASI RADSLSSPEP PKEAAKVDFG LNPCSSESLS EVIGFDKGFG  120
KLGLPEGVVK QGLELIGGPK RAELKEKWRK LHVAELELFV KRSELMRDQT KRNGVGFGLR  180
VWFICRHKAV VVFQILTLEP SEVVSDVQYK GVRFVSGRQS NPLSWWRNGE YACADFRARP  240
TPVQPPTKAL EPLIGPSLDI HNLELLPELP NSVVAAFGPP LFSNFRFRPL GSFAGVESCG  300
DEGTEGPLTR GGGGAGEAGK KWRENWSWGA AGKWGFGVER EEPEDNLRFS ISLSPRNPPL  360
SESMAGRGKS IGSGTAKKAT SRSSKAGLQF PVGRIARFLK AGKYAERVGA GAPVYLAAVL  420
EYLAAEVLEL AGNAARDNKK TRIVPRHIQL AVRNDEELSK LLGAVTIANG GVMPNIHNML  480
LPKKTGTGKS GPAED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5oy7_e7e-603644941130Histone H2A
5x0x_C7e-603644941130Histone H2A
5x0x_G7e-603644941130Histone H2A
6ftx_C6e-603644941130Histone H2A type 1
6ftx_G6e-603644941130Histone H2A type 1
6g0l_G6e-603644941130Histone H2A type 1
6i84_Q7e-603644941130Histone H2A type 1
6i84_V7e-603644941130Histone H2A type 1
6j99_C7e-603644941130Histone H2A
6j99_G7e-603644941130Histone H2A
6n1z_B7e-603644941130Histone H2A
6n1z_E7e-603644941130Histone H2A
6ne3_C6e-603644941130Histone H2A type 1
6ne3_G6e-603644941130Histone H2A type 1
6o96_C7e-603644941130Histone H2A
6o96_G7e-603644941130Histone H2A
6om3_C7e-603644941130Histone H2A
6om3_G7e-603644941130Histone H2A
6om3_O7e-603644941130Histone H2A
6om3_S7e-603644941130Histone H2A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11225RRLKKKYETNVKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.16880.0bud| cell culture| fruit| leaf| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498IXL31e-174A0A498IXL3_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490