PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000272600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 68aa    MW: 7562.86 Da    PI: 8.5047
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000272600genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26024.57.3e-08327223
         DUF260  2 CaaCkvlrrkCakdCvlapyf...p 23
                   C++C+vlr++C++ C+l+ ++    
  MDP0000272600  3 CNGCRVLRKGCSDTCILRSCLywiD 27
                   *******************995543 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.5E-4327IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MGCNGCRVLR KGCSDTCILR SCLYWIDSTE AQGSILAACF FSVGLSLRWR ISMSTRLSDI  60
NPKVRPDC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.238571e-41root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354105.11e-14PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9SZE83e-13LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A498JAZ23e-37A0A498JAZ2_MALDO; Uncharacterized protein
STRINGXP_009354105.14e-14(Pyrus x bretschneideri)
STRINGXP_008363136.17e-15(Malus domestica)
STRINGXP_008373879.17e-15(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-15LOB domain-containing protein 39