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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000261199 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | Nin-like | ||||||||
Protein Properties | Length: 658aa MW: 74887.7 Da PI: 7.8843 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83.1 | 2.6e-26 | 170 | 220 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s +++s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk++sl MDP0000261199 170 SKMLSRQTISQYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLTSL 220 578999******************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.132 | 152 | 241 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.2E-21 | 173 | 220 | IPR003035 | RWP-RK domain |
Pfam | PF14432 | 7.9E-19 | 555 | 648 | IPR032867 | DYW domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MGWLAKYDVV KDRGEDPFFF PHQPTFPSVH DFRGYACDWQ FDLPIVQDHR FPDHPLPSLE 60 SCVNIDPIYS SLDILPIRTV LQDDEIFFGN GNALFGVNSN DLCGGLTEIN HNHHQQFQQQ 120 QQPPLLLTCK NDENGITDMN DSREXRDKAI SERPXSSKRH RSSSSSLSSS KMLSRQTISQ 180 YFYMPITQAA KELNVGLTLL KKRCRELGIR RWPHRKLTSL QTLIRNIQEL GKEGEEGEEK 240 LRNAIVLLEM EKKLLEEAPD MQLEDNTKRL RQACFKANYK KRKIMGTKLW PEVYAQIDEL 300 FLRAAANKNA YVFIRYLRXR GLLAGSMASS FVIKSCIRVS SLRDTVALGL FEIMQSEVHR 360 CEPDDVTCLL VLQACASLNA LEFGXXVHKY IEEHGYGGAS NLYDSLVEXS LDKAYGVFKG 420 MRYKNVVLWS AMISGLAVNG LCHCGLVDER MMIFDRMSKE FGVVPNIHHY GCMFDLLGRA 480 GRLDQAYQLI TSMNMKPDPT IWRTLLGACR IHGNNSLAER VVGNLIELKA QEAGDYVLLM 540 NIFSSAGTWE KLTEMRKFMK EKAIQTTPGY VTSELHNLGA EDKGLXPSYH SEXWAIAFGV 600 LSTTPGTPIR VAKNLRICVD CHNFAMALSG VYNREVIIRD RTRFHHFREG RCSCNGYX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5iww_D | 1e-14 | 317 | 565 | 8 | 318 | PLS9-PPR |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008374551.2 | 0.0 | LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g47530 | ||||
Swissprot | Q9SN85 | 1e-120 | PP267_ARATH; Pentatricopeptide repeat-containing protein At3g47530 | ||||
TrEMBL | A0A498JKV8 | 0.0 | A0A498JKV8_MALDO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6184 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 5e-36 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000261199 |
Publications ? help Back to Top | |||
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