PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000254258
Common NameMYBR12
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 301aa    MW: 32954.8 Da    PI: 8.8105
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000254258genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.1e-124084147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +W++ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
    MDP0000254258 40 RESWSEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 84
                     789*****************77.*********.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.87E-153490IPR009057Homeodomain-like
PROSITE profilePS5129413.3153589IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-53890IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-183887IPR006447Myb domain, plants
SMARTSM007172.0E-93987IPR001005SANT/Myb domain
PfamPF002491.3E-94084IPR001005SANT/Myb domain
CDDcd001672.44E-74285No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MALGGLGPFA SVTATASTTS SSAEDLSKKI RKPYTITKSR ESWSEPEHDK FLEALQLFDR  60
DWKKIEAFIG SKTVIQIRSH AQKYFLKVQK NGTSEHLPPP RPKRKASHPY PQKASKNALA  120
LPPVSXSCQS SSALLESGFN QRPDSSSMLM SPIPGPVATS WTNGSVQTAN PSHESKGPAT  180
VPNNSCSTPE STPKAQPVGG TTDQVNHSHA LRVLPDFTQV YGFIGSVFDP NVTGHMQNLK  240
KMDPIDVETV LLLMRNLSMN LTNPDFEDHR QLLSSHKMDA DTGNLSDETK SRCDNQHEKV  300
S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.144280.0bud| flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744760.0DQ074476.1 Malus x domestica MYBR5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001281009.10.0protein REVEILLE 6-like
SwissprotQ8H0W31e-114RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A498KRN20.0A0A498KRN2_MALDO; Uncharacterized protein
STRINGXP_008380163.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-113MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]